jt's Publication List

(Google Scholar profile)

  1. R. Rojas-Gomez, J. Yang, Y. Lin, J. Theiler, and B. Wohlberg. "Physics-consistent data-driven waveform inversion with adaptive data augmentation." Geoscience and Remote Sensing Letters (2020).

  2. J. Theiler and A. Schaum. "Some closed-form expressions for absorptive plume detection." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2020) 1786-1789.

  3. J. Theiler. "A few brief notes on the equivalence of two expressions for statistical significance in point source detections." arXiv:2008.05574 (2020).
    Note: written in 1998, and never published (until now).

  4. J. Theiler. "Generalized likelihood ratio test detector for a modified replacement model target in a multivariate t-distributed background." arXiv:2007.12662 (2020).

  5. K. Post, L. A. Ott, M. E. Dale, C. L. Safi, K. G. Boyd, H. D. Mohr, J. Theiler, B. R. Foy, M. Hehlen, C. G. Peterson, R. Hemphill, J. A. Wren, A. A. Guthrie, M. C. Proicou, N. A. Dallmann, P. S. Stein, M. K. Dubey, and S. P Love. "NACHOS: A High-Resolution Hyperspectral Imager for Atmospheric Trace Gas Monitoring in a CubeSat Configuration." American Geophysical Union, Fall Meeting 2020, abstract #715909.

  6. B. Korber, W. M. Fischer, S. Gnanakaran, H. Yoon, J. Theiler, W. Abfalterer, N. Hengartner, E. E. Giorgi, T. Bhattacharya, B. Foley, K. M. Hastie, M. D. Parker, D. G. Partridge, C. M. Evans, T. M. Freeman, T. I. de Silva, A. Angyal, R. L. Brown, L. Carrilero, L. R. Green, D. C. Groves, K. J. Johnson, A. J. Keeley, B. B. Lindsey, P. J. Parsons, M. Raza, S. Rowland-Jones, N. Smith, R. M. Tucker, D. Wang, M. D. Wyles, C. McDanal, L. G. Perez, H. Tang, A. Moon-Walker, S. P. Whelan, C. C. LaBranche, E. O. Saphire, and D. C. Montefiori. "Tracking changes in SARS-CoV-2 Spike: evidence that D614G increases infectivity of the COVID-19 virus." Cell 182 (2020) 812-827.

  7. L. R. Chavez, N. R. Reddy, K. A. Raymond, M. S. Bouzidi, S. Desai, Z. Y. Dossani, H. S. Sperber, J. Theiler, B. Korber, and S. K. Pillai. "Durable Control of HIV-1 Using a Staphylococcus aureus Cas9-Expressing Lentivirus Co-Targeting Viral Latency and Host Susceptibility." bioRxiv 2020.08.10.243329 (2020).

  8. J. Theiler, M. Kucer, and A. Ziemann. "Experiments in Anomalous Change Detection with the Viareggio 2013 Trial Dataset." Proc. SPIE 11392 (2020) 1139211.

  9. C. X. Ren, A. Ziemann, J. Theiler, and A. M. S. Durieux. "Deep Snow: Synthesizing Remote Sensing Imagery with Generative Adversarial Nets." Proc. SPIE 11392 (2020) 113920T.

  10. E. C. Reinisch, A. Ziemann, E. B. Flynn, and J. Theiler. "Combining multispectral imagery and synthetic aperture radar for detecting deforestation." Proc. SPIE 11392 (2020) 1139209.

  11. C. X. Ren, M. T. Calef, A. M. S. Durieux, A. Ziemann, and J. Theiler. "On the Detectability of Conflict: a Remote Sensing Study of the Rohingya Conflict." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI) (2020) 86-89.

  12. C. X. Ren, A. Ziemann, J. Theiler, and A. M. S. Durieux. "Cycle-Consistent Adversarial Networks for Realistic Pervasive Change Generation in Remote Sensing Imagery." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI) (2020) 42-25.

  13. E. C. Reinisch, J. Theiler, and A. Ziemann. "Identifying forest thinning using anomalous change detection on synthetic aperture radar data." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI) (2020) 38-41.

  14. Y. Lin, J. Theiler, B. Wohlberg, Y. Wu, and Z. Zhang. "Data-driven Methods for Solving Large-scale Inverse Problems with Applications to Subsurface Imaging." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI) (2020) 13.

  15. J. Theiler. "Simple generative model for assessing feature selection based on relevance, redundancy, and redundancy." Proc. SPIE 11139 (2019) 111390S.

  16. S. A. Behnke, H. E. Edens, S. Senay, J. B. Johnson, K. Eack, M. Caffrey, J. Theiler, A. R. Van Eaton, D. J. Schneider, M. Iguchi, and D. Miki. "Early Detection of Explosive Volcanic Eruptions Using VHF Radiation from Vent Discharges." American Geophysical Union, Fall Meeting 2019, abstract #V23F-0267.

  17. H. O Funsten, M. Bzowski, M. A Dayeh, P. A Fernandes, P. C Frisch, P. H Janzen, D. J McComas, D. B. Reisenfeld, N. Schwadron, J. Theiler, G. P. Zank, and E. Zirnstein. "Properties of the Energetic Neutral Atom Emission from the Ribbon." American Geophysical Union, Fall Meeting 2019, abstract #SH53A-05.

  18. J. Theiler, A. Ziemann, S. Matteoli, and M. Diani. "Spectral variability of remotely-sensed target materials: causes, models, and strategies for mitigation and robust exploitation." Geoscience and Remote Sensing Magazine 7 (June 2019) 8-30.

  19. J. Theiler and A. Ziemann. "Background estimation in multispectral imagery." Proc. OSA Hyperspectral Imaging and Sounding of the Environment (HISE) (2019) HW6B.1.

  20. A. Ziemann, C. X. Ren, and J. Theiler. "Multi-sensor anomalous change detection at scale." Proc. SPIE 10986 (2019) 1098615.

  21. J. Theiler and S. P. Love. "Algorithm development with on-board and ground-based components for hyperspectral gas detection from small satellites." Proc. SPIE 10986 (2019) 109860O.

  22. J. Theiler. "Anomaly testing." Chapter 19 in: Statistical Methods for Materials Science: The Data Science of Microstructure Characterization, edited by J. P. Simmons, C. A. Bouman, M. De Graef, L. F. Drummy, Jr. (CRC Press, 2019) 323-338.

  23. P. V. Balachandran, D. Xue, J. Theiler, J. Hogden, J. E. Gubernatis, and T. Lookman. "Importance of Feature Selection in Machine Learning and Adaptive Design for Materials." Chapter 3 of: Materials Discovery and Design: By Means of Data Science and Optimal Learning, Springer Series in Materials Science (2018), 59-80.

  24. S. A. Behnke, H. E. Edens, and J. Theiler. "Vent Discharges Produced by Explosive Volcanic Eruptions: Characteristics, Signatures, and Volcano Monitoring Applications." American Geophysical Union, Fall Meeting 2018,abstract #V51E-0149.

  25. S. P. Love, L. A. Ott, J. Theiler, B. R. Foy, C. L Safi, M. E. Dale, C. G. Peterson, A. A. Guthrie, N. A. Dallman, K. G. Boyd, P. S. Stein, J. A. Wren, M. C. Proicou, and M. K. Dubey. "High-Resolution Hyperspectral Imaging of Dilute Gases from CubeSat Platforms." American Geophysical Union, Fall Meeting 2018, abstract #A41K-3107.

  26. C. A. Bricault, K. Yusim, M. S. Seaman, H. Yoon, J. Theiler, E. E. Giorgi, K. Wagh, M. Theiler, P. Hraber, J. P. Macke, E. F. Kreider, G. H. Learn, B. H. Hahn, J. F. Scheid, J. M. Kovacs, J. L. Shields, C. L. Lavine, F. Ghantous, M. Rist, M. G. Bayne, G. H. Neubauer, K. McMahan, H. Peng, C. Chéneau, J. J. Jones, J. Zeng, C. Ochsenbauer, J. P. Nkolola, K. E. Stephenson, B. Chen, S. Gnanakaran, M. Bonsignori, L. D. Williams, B. F. Haynes, N. Doria-Rose, J. R. Mascola, D. C. Montefiori, D. H. Barouch, and B. Korber. "HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design." Cell Host & Microbe 25 (2019) 59-72.

  27. E. O. Saphire, S. L Schendel, M. L Fusco, K. Gangavarapu, B. M Gunn, A. Z Wec, P. J Halfmann, J. M Brannan, A. S Herbert, X. Qiu, K. Wagh, S. He, E. E Giorgi, J. Theiler, K. B J Pommert, T. B Krause, H. L Turner, C. D Murin, J. Pallesen, E. Davidson, R. Ahmed, M J. Aman, A. Bukreyev, D. R Burton, J. E Crowe Jr., C. W Davis, G. Georgiou, F. Krammer, C. A Kyratsous, J. R Lai, C. Nykiforuk, M. H Pauly, P. Rijal, A. Takada, A. R Townsend, V. Volchkov, L. M Walker, C. Wang, L. Zeitlin, B. J Doranz, A. B Ward, B. Korber, G. P Kobinger, K. G Andersen, Y. Kawaoka, G. Alter, K. Chandran, J. M Dye, and Viral Hemorrhagic Fever Immunotherapeutic Consortium. "Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection." Cell 174 (2018) 938-952.

  28. J. Theiler, B. R. Foy, C. Safi, and S. P. Love. "Onboard Cubesat data processing for hyperspectral detection of chemical plumes." Proc. SPIE 10644 (2018) 1064405.

  29. A. Ziemann, M. Kucer, and J. Theiler. "A machine learning approach to hyperspectral detection of solid targets." Proc. SPIE 10644 (2018) 1064404.

  30. J. Theiler, B. Zimmer, and A. Ziemann. "Closed-form detector for solid sub-pixel targets in multivariate t-distributed background clutter." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2018) 2773-2776.

  31. J. Theiler and B. G. Zimmer. "Selecting the selector: comparison of update rules for discrete global optimization." Statistical Analysis and Data Mining 10 (2017) 211-229.

  32. J. Theiler and B. Korber. "Graph-based optimization of epitope coverage for vaccine antigen design." Statistics in Medicine 37 (2017) 181-194.

  33. P. V. Balachandran, T. Shearman, J. Theiler, and T. Lookman. "Predicting displacements of octahedral cations in ferroelectric perovskites using machine learning." Acta Crystallographica B 73 (2017) 962-967.

  34. A. Ziemann and J. Theiler. "Simplex ACE: a constrained subspace detector." Optical Engineering 56 (2017) 081808, doi: 10.1117/1.OE.56.8.081808.

  35. J. Theiler and A. Ziemann. "Segmented regression for spatio-spectral background estimation." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2017) 3984-3987.

  36. A. Ziemann and J. Theiler. "Variable target detection using Simplex ACE." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2017) 1347-1350.

  37. J. Theiler and A. Ziemann. "Local background estimation and the replacement target model." Proc. SPIE 10198 (2017) 101980V.

  38. A. Ziemann, J. Theiler, and E. Ientilucci. "Experiments with Simplex ACE: dealing with highly variable targets." Proc. SPIE 10198 (2017) 101980F.

  39. Y. Cai, S. Karaca-Griffin, J. Chen, S. Tian, N. Fredette, C. E. Linton, S. Rits-Volloch, J. Lu, K. Wagh, J. Theiler, B. Korber, M. S. Seaman, S. C. Harrison, A. Carfi, and B. Chen. "Antigenicity-defined conformations of an extremely neutralization-resistant HIV-1 envelope spike." Proc. National Academy of Sciences 114 (2017) 4477-4482.

  40. Y. Yang, C. Dorn, T. Mancini, Z. Talken, J. Theiler, G. Kenyon, C. Farrar, and D. Mascarenas. "Reference-free detection of minute, non-visible, damage using full-field mode shapes output-only identified from digital videos of structures." Structural Health Monitoring (2017) doi:10.1177/1475921717704385.

  41. T. Lookman, P. V. Balachandran, D. Xue, J. Hogden, and J. Theiler. "Statistical inference and adaptive design for materials discovery." Current Opinion in Solid State and Materials Science (doi: 10.1016/j.cossms.2016.10.002).

  42. J. Theiler, H. Yoon, K. Yusim, L. J. Picker, K. Frueh, and B. Korber. "Epigraph: A vaccine design tool applied to an HIV therapeutic vaccine and a pan-Filovirus vaccine." Scientific Reports 6 (2016) 33987.

  43. A. Ziemann and J. Theiler. "Material detection in hyperspectral imagery in support of nuclear nonproliferation." American Nuclear Society (ANS) Advances in Nuclear Nonproliferation Technology and Policy Conference (2016).

  44. J. Theiler and G. Grosklos. "Cracks in KRX: when more distant points are less anomalous." 8th IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2016).

  45. J. Theiler. "Generic target response as a measure of regression accuracy in multispectral background estimation." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation SSIAI (2016) 45-48.

  46. A. K. Ziemann and J. Theiler. "Graph-based and statistical approaches for detecting spectrally variable target materials." Proc. SPIE 9840 (2016) 98400T.

  47. J. Theiler and A. K. Ziemann. "Right spectrum in the wrong place: a framework for local hyperspectral anomaly detection." Proc. Computational Imaging XIV (2016).

  48. D. Xue, P. V. Balachandran, J. Hogden, J. Theiler, D. Xue, and T. Lookman. "Accelerated search for materials with targeted properties by adaptive design." Nature Communications 7 (2016) 11241.

  49. J. Theiler and G. Grosklos. "Problematic projection to the in-sample subspace for a kernelized anomaly detector." IEEE Geoscience and Remote Sensing Letters 13 (2016) 485-489.

  50. P. V. Balachandran, D. Xue, J. Theiler, J. Hogden, and T. Lookman. "Adaptive strategies for materials design using uncertainties." Scientific Reports 6 (2016) 19660.

  51. T. Lookman, P. V. Balachandran, D. Xue, G. Pilania, T. Shearman, J. Theiler, J. E. Gubernatis, J. Hogden, K. Barros, E. BenNaim, and F. J. Alexander. "A Perspective on Materials Informatics: State-of-the-Art and Challenges." Information Science for Materials Discovery and Design, Volume 225 of Springer Series in Materials Science (2015) 3-12.

  52. A. K. Ziemann, J. Theiler, and D. W. Messinger. "Hyperspectral target detection using manifold learning and multiple target spectra." Proc. 44th IEEE Applied Imagery Pattern Recognition (AIPR) Workshop (2015).

  53. P. V. Balachandran, J. Theiler, J. M. Rondinelli, and T. Lookman. "Materials Prediction via Classification Learning." Scientific Reports 5 (2015) 13285.

  54. J. Theiler. "Symmetrized regression for hyperspectral background estimation." Proc. SPIE 9472 (2015) 94721G.

  55. G. Grosklos and J. Theiler. "Ellipsoids for anomaly detection in remote sensing imagery." Proc. SPIE 9472 (2015) 94720P.

  56. J. Theiler. "Anomalousness: how to measure what you can't define." In Fourier Transform Spectroscopy and Hyperspectral Imaging and Sounding of the Environment, OSA Technical Digest (Optical Society of America), paper JT1A.2 (2015).

  57. J. Theiler. "By Definition Undefined: Adventures in Anomaly (and Anomalous Change) Detection." 6th IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2014).
    Note: This paper accompanies the invited plenary talk given by the author at this conference in Lausanne; unfortunately, the paper does not appear with the rest of the WHISPERS proceedings.

  58. S. Matteoli, M. Diani, and J. Theiler. "An overview of background modeling for detection of targets and anomalies in hyperspectral remotely sensed imagery." J. Selected Topics in Applied Earth Observations and Remote Sensing (JSTARS) 7 (2014) 2317-2336.

  59. T. Song, Y. Park, I. C. Shamputa, S. Seo, S. Y. Lee, H. Jeon, H. Choi, M. Lee, R. J. Glynne, S. W. Barnes, J. R. Walker, S. Batalov, K. Yusim, S. Feng, C. Tung, J. Theiler, L. E. Via, H. I. M. Boshoff, K. S. Murakami, B. Korber, C. E. Barry 3rd, and S. Cho. "Fitness costs of rifampicin-resistance in Mycobacterium tuberculosis are amplified under conditions of nutrient starvation and compensated by mutation in the β' subunit of RNA polymerase." Molecular Microbiology 91 (2014) 1106-1119.

  60. J. Theiler. "Transductive and Matched-Pair Machine Learning for Difficult Target Detection Problems." Proc. SPIE 9088 (2014) 90880E.

  61. J. Theiler. "Matched-pair machine learning." Technometrics 55 (2013) 536-547.

  62. R. Porter, J. Theiler, and D. Hush. "Interactive Machine Learning in Data Exploitation." Computing in Science and Engineering 15:5 (Sept/Oct 2013) 12-30.

  63. J. Theiler. "Spatio-spectral anomalous change detection in hyperspectral imagery." Proc. 1st IEEE Global Signal and Information Processing Conference (2013) 953-956.

  64. J. Theiler and B. Wohlberg. "Regression framework for background estimation in remote sensing imagery." 5th IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2013).

  65. Z. Ji, J. Theiler, R. Chartrand, G. Kenyon, and S. P. Brumby. "SIFT-based Sparse Coding for Large-scale Visual Recognition." Proc. SPIE 8750 (2013) 87500K.

  66. J. Theiler and B. Wohlberg. "Detection of unknown gas-phase chemical plumes in hyperspectral imagery." Proc. SPIE 8743 (2013) 874315.

  67. N. F. Parrish, F. Gao, H. Li, E. E. Giorgi, H. J. Barbian, E. H. Parrish, L. Zajic, S. S. Iyer, J. M. Decker, A. Kumar, B. Hora, A. Berg, F. Cai, J. Hopper, T. N. Denny, H. Ding, C. Ochsenbauer, J. C. Kappes, R. P. Galimidi, A. P. West, P. J. Bjorkman, C. B. Wilen, R. W. Doms, M. O'Brien, N. Bhardwaj, P. J. Borrow, B. F. Haynes, M. Muldoon, J. Theiler, B. Korber, G. M. Shaw, and B. H. Hahn. "Phenotypic properties of transmitted founder HIV-1." Proc. National Academy of Sciences 110 (2013) 6626-6633.

  68. K. Yusim, R. Dilan, E. Borducchi, K. Stanley, E. Giorgi, W. Fischer, J. Theiler, J. Marcotrigiano, B. Korber, and D. H Barouch. "Hepatitis C Genotype 1 Mosaic Vaccines Are Immunogenic in Mice and Induce Stronger T-Cell Responses than Natural Strains." Clinical and Vaccine Immunology 20 (2013) 302-305.

  69. D. Mascarenas, A. Cattaneo, J. Theiler, and C. Farrar. "Compressed sensing techniques for detecting damage in structures." Structural Health Monitoring 12 (2013) 325-338.

  70. H. Kwon, X. Hu, J. Theiler, A. Zare, and P. Gurram. "Editorial: Algorithms for Multispectral and Hyperspectral Image Analysis." J. Electrical and Computer Engineering (2013) 908906.

  71. J. Theiler. "Formulation for min-max clairvoyant fusion based on monotonic transformation of statistics." Optical Engineering 51 (2012) 111714.

  72. J. Theiler. "The incredible shrinking covariance estimator." Proc. SPIE 8391 (2012) 83910P.

  73. L. Prasad, J. Theiler, M. B. Fair, and S. Swaminarayan. "Feature extraction, anomaly, and change detection on WorldView2 imagery by hierarchical image segmentation - a study." Proc. SPIE 8390 (2012) 83901U.

  74. J. Theiler. "Confusion and clairvoyance: some remarks on the composite hypothesis testing problem." Proc. SPIE 8390 (2012) 839003.

  75. J. Theiler and B. Wohlberg. "Detection of spectrally sparse anomalies in hyperspectral imagery." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (2012) 117-120.

  76. B. Wohlberg, R. Chartrand, and J. Theiler. "Local Principal Component Pursuit for Nonlinear Datasets." Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP) (2012) 3925-3928.

  77. J. Theiler and B. Wohlberg. "Local Co-Registration Adjustment for Anomalous Change Detection." IEEE Trans. Geoscience and Remote Sensing 50 (2012) 3107-3116.

  78. L. R. Bachega, J. Theiler, and C. A. Bouman. "Evaluating and improving local hyperspectral anomaly detectors." Proc. 40th IEEE Applied Imagery Pattern Recognition (AIPR) Workshop (2011) doi:10.1109/AIPR.2011.6176369.

  79. D. Mascarenas, D. Hush, J. Theiler, and C. Farrar. "The Application of Compressed Sensing to Detecting Damage in Structures." Proc. Eighth International Workshop on Structural Health Monitoring (2011) 1013-1020.

  80. J. Theiler, G. Cao, L. R. Bachega, and C. A. Bouman. "Sparse matrix transform for hyperspectral image processing." Journal of Selected Topics in Signal Processing 5 (2011) 424-437.

  81. J. Theiler. "Ellipsoid-simplex hybrid for hyperspectral anomaly detection." Proc. 3rd IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2011) doi:10.1109/WHISPERS.2011.6080893.

  82. J. Theiler and L. Prasad. "Overlapping image segmentation for context-dependent anomaly detection." Proc. SPIE 8048 (2011) 804807.

  83. L. R. Bachega, C. A. Bouman, and J. Theiler. "Hypothesis Testing in High-Dimensional Space with the Sparse Matrix Transform." Proc. Sixth IEEE Sensor Array and Multichannel Signal Processing Workshop (2010) 181-184.

  84. C. Scovel, D. Hush, I. Steinwart, and J. Theiler. "Radial kernels and their Reproducing Kernel Hilbert Spaces." Journal of Complexity 26 (2010) 641-660.

  85. J. Theiler and D. Hush. "Statistics for characterizing data on the periphery." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2010) 4764-4767.

  86. J. Theiler, G. Cao, and C. A. Bouman. "Sparse matrix transform for fast projection to reduced dimension." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2010) 4362-4365.

  87. I. Steinwart, J. Theiler, and D. Llamocca. "Using support vector machines for anomalous change detection." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2010) 3732-3735.

  88. A. Matsekh and J. Theiler. "Block-diagonal representations for covariance-based anomalous change detectors." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) (2010) 3202-3205.

  89. J. Theiler and A. Matsekh. "Total least squares for anomalous change detection." Proc. SPIE 7695 (2010) 76951H.

  90. R. Porter, D. Hush, N. Harvey, and J. Theiler. "Toward Interactive Search in Remote Sensing Imagery." Proc. SPIE 7709 (2010) 77090V.

  91. N. R. Harvey, R. Porter, and J. Theiler. "Ship detection in satellite imagery using rank-order grayscale hit-or-miss transforms." Proc. SPIE 7701 (2010) 770102.

  92. S. Santra, H. Liao, R. Zhang, M. Muldoon, S. Watson, W. Fischer, J. Theiler, J. Szinger, H. Balachandran, A. Buzby, D. Quinn, R. J Parks, C. Tsao, A. Carville, K. G Mansfield, G. N Pavlakis, B. K Felber, B. F Haynes, B. T Korber, and N. L Letvin. "Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys." Nature Medicine 16 (2010) 324-328.

  93. J. Theiler, B. R. Foy, B. Wohlberg, and C. Scovel. "Parametric probability distributions for anomalous change detection." Proc. MSS (Military Sensing Symposia) (2010).

  94. B. R. Foy and J. Theiler. "Change detection for hyperspectral sensing in a transformed low-dimensional space." Proc. MSS (Military Sensing Symposia) (2010).

  95. B. Wohlberg and J. Theiler. "Symmetrized local co-registration optimization for anomalous change detection." Proc. SPIE 7533 (2010) 753307.

  96. J. Theiler, C. Scovel, B. Wohlberg, and B. R. Foy. "Elliptically contoured distributions for anomalous change detection in hyperspectral imagery." IEEE Geoscience and Remote Sensing Letters 7 (2010) 271-275 doi: 10.1109/LGRS.2009.2032565.

  97. B. Wohlberg and J. Theiler. "Improved change detection with local co-registration adjustments." Proc. 1st IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2009), doi: 10.1109/WHISPERS.2009.5289041.

  98. G. Cao, C. A. Bouman, and J. Theiler. "Weak signal detection in hyperspectral imagery using Sparse Matrix Transform (SMT) covariance estimation." Proc. 1st IEEE Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS) (2009), doi: 10.1109/WHISPERS.2009.5289043.

  99. B. R. Foy, J. Theiler, and A. M. Fraser. "Decision boundaries in two dimensions for target detection in hyperspectral imagery." Optics Express 17 (2009) 17391-17411.

  100. A. M. N. Tsibris, B. Korber, R. Arnaout, C. Russ, C. Lo, T. Leitner, B. Gaschen, J. Theiler, R. Paredes, Z. Su, M. D. Hughes, R. M. Gulick, W. Greaves, E. Coakley, C. Flexner, C. Nusbaum, and D. R. Kuritzkes. "Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo." PLoS ONE 4 (2009) e5683.

  101. R. Porter, N. R. Harvey, and J. Theiler. "A change detection approach to moving object detection in low frame rate video." Proc. SPIE 7341 (2009) 73410S.

  102. L. Prasad and J. Theiler. "A structural framework for anomalous change detection and characterization." Proc. SPIE 7341 (2009) 73410N.

  103. J. Theiler, N. R. Harvey, R. Porter, and B. Wohlberg. "Simulation framework for spatio-spectral anomalous change detection." Proc. SPIE 7334 (2009) 73340P.

  104. B. R. Foy, J. Theiler, and C. R. Quick. "Band Selection for Multispectral Target Detection using Hyperspectral Data." Proc. MSS Conf. on Battlefield Survivability and Discrimination, Orlando, FL, Feb. 2009. LA-CP-09-0170.

  105. J. Theiler and C. Scovel. "Uncorrelated versus independent elliptically-contoured distributions for anomalous change detection in hyperspectral imagery." Proc. SPIE 7246 (2009) 72460T.

  106. J. Theiler and S. M. Adler-Golden. "Detection of ephemeral changes in sequences of images." Proc 37th IEEE Applied Imagery Pattern Recognition Workshop (AIPR '08): Multiple Image Information Extraction (2009), doi:10.1109/AIPR.2008.4906469.

  107. J. Theiler and B. R. Foy. "EC-GLRT: Detecting weak plumes in non-Gaussian hyperspectral clutter using an elliptically-contoured generalized likelihood ratio test." Proc. IGARSS (2008) I-221.

  108. J. Theiler. "Quantitative comparison of quadratic covariance-based anomalous change detectors." Applied Optics 47 (2008) F12-F26.

  109. M. F. McCabe, L. K. Balick, J. Theiler, A. R. Gillespie, and A. Mushkin. "Linear mixing in thermal infrared temperature retrieval." Int. J. Remote Sensing 29 (2008) 5047-5061.

  110. J. Thurmond, H. Yoon, C. Kuiken, K. Yusim, S. Perkins, J. Theiler, T. Bhattacharya, B. Korber, and W. Fischer. "Web-based design and evaluation of T-cell vaccine candidates." BioInformatics doi:10.1093/bioinformatics/btn251 (2008).

  111. B. R. Foy, J. Theiler, and A. M. Fraser. "Hyperspectral Target Detection using Machine Learning in a Reduced Dimensional Space." Proc. MSS (Military Sensing Symposia) Passive Sensors Conference (2008). LA-CP-08-0026.
    Note: Awarded Best Paper for counter-CCD (Camouflage Concealment and Deception).

  112. J. Theiler. "Subpixel Anomalous Change Detection in Remote Sensing Imagery." Proc. IEEE Southwest Symposium on Image Analysis and Interpretation (2008) 165-168.

  113. J. Theiler. "Sensitivity of anomalous change detection to small misregistration errors." Proc. SPIE 6966 (2008) 69660X.

  114. L. Balick, W. Clodius, C. Jeffery, J. Theiler, M. McCabe, A. Gillespie, A. Mushkin, and I. Danilina. "Model and measurements of linear mixing in thermal IR ground leaving radiance spectra." Proc. SPIE 6749 (2007) 674914.

  115. J. Theiler and S. Perkins. "Resampling approach for anomalous change detection." Proc. SPIE 6565 (2007) 65651U.

  116. J. Theiler, B. R. Foy, and A. M. Fraser. "Beyond the adaptive matched filter: nonlinear detectors for weak signals in high-dimensional clutter." Proc. SPIE 6565 (2007) 656503.

  117. D. M. Cai, M. Gokhale, and J. Theiler. "Comparison of Feature Selection and Classification Algorithms in Identifying Malicious Executables." Computational Statistics and Data Analysis 51 (2007) 3156-3172.

  118. W. Fischer, S. Perkins, J. Theiler, T. Bhattacharya, K. Yusim, R. Funkhouser, C. Kuiken, B. Haynes, N. L. Letvin, B. D. Walker, B. H. Hahn, and B. T. Korber. "Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants." Nature Medicine 13 (2007) 100-106.

  119. M. Dundar, J. Theiler, and S. Perkins. "Incorporating Spatial Contiguity into the Design of a Support Vector Machine Classifier." Proc. IGARSS (2006) 364-367.

  120. B. R. Foy, J. Theiler, and A. M. Fraser. "Unreasonable Effectiveness of the Adaptive Matched Filter." Proc. MSS (Military Sensing Symposia) Passive Sensors Conference (2006).

  121. K. Yusim, W. Fischer, S. Perkins, T. Bhattacharya, J. Theiler, T. Allen, G. Lauer, B. Korber, and C. Kuiken. "Rational design of HCV vaccine cocktails that maximize coverage of potential CTL epitopes." Journal of Clinical Virology 36 (2006) S164-S165.

  122. R. Kuehnel, J. Theiler, and Y. Wang. "Parallel Random Number Generators for Sequences Uniformly Distributed Over Any Range of Integers." IEEE Trans. Circuits and Systems I 53 (2006) 1496-1505.

  123. E. A. Weaver, Z. Lu, Z. T. Camacho, F. Moukdar, H. Liao, B. Ma, M. Muldoon, J. Theiler, G. J. Nabel, N. L. Letvin, B. T. Korber, B. H. Hahn, B. F. Haynes, and F. Gao. "Cross-subtype T Cell Immune Responses induced by an HIV-1 Group M Consensus Env Immunogen." Journal of Virology 80 (2006) 6745-6756.

  124. J. Theiler and S. Perkins. "Proposed Framework for Anomalous Change Detection." ICML Workshop on Machine Learning Algorithms for Surveillance and Event Detection (2006) 7-14.

  125. J. Theiler, B. R. Foy, and A. M. Fraser. "Nonlinear signal contamination effects for gaseous plume detection in hyperspectral imagery." Proc. SPIE 6233 (2006) 62331U.

  126. J. Theiler and K. Glocer. "Sparse linear filters for detection and classification in hyperspectral imagery." Proc. SPIE 6233 (2006) 62330H.

  127. J. Theiler and J. Alper. "On the Choice of Random Directions for Stochastic Approximation Algorithms." IEEE Trans. on Automatic Control 51 (2006) 476-481.

  128. J. Theiler and B. R. Foy. "Effect of signal contamination in matched-filter detection of the signal on a cluttered background." IEEE Geoscience and Remote Sensing Letters 3 (2006) 98-102.

  129. A. Galbraith, J. Theiler, K. Thome, and R. Ziolkowski. "Resolution Enhancement of Multi-look Imagery for the Multispectral Thermal Imager." IEEE Trans. Geoscience and Remote Sensing 43 (2005) 1964-1977.

  130. K. Glocer, D. Eads, and J. Theiler. "Online Feature Selection for Pixel Classification." Proc. ICML 22 (2005) 249-256.

  131. J. Theiler, B. R. Foy, and A. M. Fraser. "Characterizing non-Gaussian clutter and detecting weak gaseous plumes in hyperspectral imagery." Proc. SPIE 5806 (2005) 182-193.

  132. J. Theiler, N. Harvey, N. A. David, and J. M. Irvine. "Approach to Target Detection based on Relevant Metric for Scoring Performance." Proc. 33rd IEEE Applied Imagery Pattern Recognition Workshop (AIPR '04): Emerging Technologies and Applications for Imagery Pattern Recognition (IEEE Computer Society Press, 2005) 184-189.

  133. D. M. Cai, J. Theiler, and M. Gokhale. "Detecting a Malicious Executable without Prior Knowledge of Its Patterns." Proc. SPIE 5812 (2005) 1-12.

  134. W. T. Vestrand, A. Becker, S. Perkins, J. Theiler, J. A. Tyson, A. Rest, C. Smith, C. Stubbs, N. B. Suntzeff, and P. R. Wozniak. "Multiple Dimensions of LSST Transient Detection: How do we detect things that go bump in the night that we have not yet thought of?." Bulletin of the American Astronomical Society 36:5 (2004).

  135. G. T. Kenyon, B. J. Travis, J. Theiler, J. S. George, G. J. Stephens, and D. W. Marshak. "Stimulus-Specific Oscillations in a Retinal Model." IEEE Trans. Neural Networks 15 (2004) 1083-1091.

  136. W. T. Vestrand, J. Theiler, and P. R. Wozniak. "Unsolved Problems in Observational Astronomy. II. Focus on Rapid Response - Mining the Sky with "Thinking" Telescopes." Astronomische Nachrichten 325 (2004) 477-482.

  137. G. T. Kenyon, J. Theiler, J. S. George, B. J. Travis, and D. W. Marshak. "Correlated Firing Improves Stimulus Discrimination in a Retinal Model." Neural Computation 16 (2004) 2261-2291.

  138. G. T. Kenyon, N. R. Harvey, G. J. Stephens, and J. Theiler. "Dynamic Segmentation of Grey-Scale Images in a Computer Model of the Mammalian Retina." Proc. SPIE 5558 (2004) 1-12.

  139. N. R. Harvey and J. Theiler. "Focus-of-Attention Strategies for Finding Discrete Objects in Multispectral Imagery." Proc. SPIE 5546 (2004) 179-189.

  140. B. R. Foy and J. Theiler. "Scene Analysis and Detection in Thermal Infrared Remote Sensing Using Independent Component Analysis." Proc. SPIE 5439 (2004) 131-139.
    Note: Invited Paper.

  141. G. T. Kenyon, D. Hill, J. Theiler, J. S. George, and D. W. Marshak. "A theory of the Benham Top based on center-surround interactions in the parvocellular pathway." Neural Networks 17 (2004) 773-786.

  142. J. Ma, J. Theiler, and S. Perkins. "Two Realizations of a General Feature Extraction Framework." Pattern Recognition 37 (2004) 875-887.

  143. B. G. Henderson, J. Theiler, and P. Villeneuve. "The polarized emissivity of a wind-roughened sea surface: a Monte-Carlo model." Remote Sensing of Environment 88 (2003) 453-467.

  144. J. Ma, J. Theiler, and S. Perkins. "Accurate Online Support Vector Regression." Neural Computation 15 (2003) 2683-2703.

  145. R. Porter, D. Eads, D. Hush, and J. Theiler. "Weighted Order Statistic Classifiers with Large Rank-Order Margin." Proc. ICML 20 (2003) 600-607.

  146. S. Perkins and J. Theiler. "Online Feature Selection using Grafting." Proc. ICML 20 (2003) 592-599.

  147. D. R. Eads, S. J. Williams, J. Theiler, R. Porter, N. R. Harvey, S. J. Perkins, S. Brumby, and N. A. David. "A Multimodal Approach to Feature Extraction for Image and Signal Learning Problems." Proc. SPIE 5200 (2003) 79-90.

  148. E. Trachtenberg, B. Korber, C. Sollars, T. Kepler, P. T. Hraber, R. K. Funkhouser, E. Hayes, M. Fugate, J. Theiler, Y. Hsu, K. Kunstman, S. Wu, H. Erlich, and S. Wolinsky. "HLA Rare Supertype Advantage in Human Immunodeficiency Virus (HIV) Disease Progression." Nature Medicine 9 (2003) 928-935.

  149. L. K. Balick, C. C. Borel, P. Chylek, W. B. Clodius, A. B. Davis, A. E. Galbraith, B. Henderson, S. L. Lawson, P. A. Pope, A. P. Rodger, and J. Theiler. "LANL MTI Science Team Experience." Proc. SPIE 5159 (2003) 125-138.

  150. P. Pope, J. Theiler, and A. Galbraith. "LANL Experience with Coregistration of MTI Imagery." Proc. SPIE 5159 (2003) 139-146.

  151. P. Pope and J. Theiler. "Photogrammetric Image Registration (PIR) of MTI Imagery." Proc. SPIE 5151 (2003) 517-530.

  152. N. R. Harvey, S. Perkins, P. A. Pope, J. Theiler, N. A. David, and R. B. Porter. "Investigation of Automated Feature Extraction Using Multiple Data Sources." Proc. SPIE 5099 (2003) 190-200.

  153. P. Pope and J. Theiler. "Automated Image Registration (AIR) of MTI Imagery." Proc. SPIE 5093 (2003) 294-305.

  154. A. Galbraith, J. Theiler, and S. Bender. "Resampling Methods for the MTI Coregistration Product." Proc. SPIE 5093 (2003) 283-293.

  155. J. Theiler and D. M. Cai. "Resampling Approach for Anomaly Detection in Multispectral Images." Proc. SPIE 5093 (2003) 230-240.

  156. G. T. Kenyon, D. Hill, J. S. George, J. Theiler, and D. W. Marshak. "A theory of the benham top based on convergent magno- and parvo- cellular inputs to cortical color-opponent neurons." Society for Neuroscience Abstracts 29 (2003).

  157. G. J. Stephens, J. S. George, J. Theiler, D. W. Marshak, S. Neuenschwander, W. Singer, and G. T. Kenyon. "See globally spike locally: retinal oscillations encode large contiguous features." Society for Neuroscience Abstracts 29 (2003).

  158. G. T. Kenyon, J. Theiler, D. W. Marshak, B. Moore, J. Jeffs, and B. J. Travis. "Firing Correlations Improve Detection of Moving Bars." Proc. IJCNN (2003) 1274-1279.

  159. S. Perkins, K. Lacker, and J. Theiler. "Grafting: Fast, Incremental Feature Selection by Gradient Descent in Function Space." Journal of Machine Learning Research 3 (2003) 1333-1356.

  160. C. M. Brislawn, W. B. Clodius, N. R. Harvey, M. D. Quirk, and J. Theiler. "Multispectral and Hyperspectral Image Processing: Transforms, Classifications, and Codings." Dekker Encyclopedia of Optical Engineering, R. Driggers, ed. (Marcel Dekker, New York, 2003) 1421-1441.

  161. W. B. Clodius, J. Theiler, and C. M. Brislawn. "Multispectral and Hyperspectral Image Processing: Spectral Analysis." Dekker Encyclopedia of Optical Engineering , R. Driggers, ed. (Marcel Dekker, New York, 2003) 1406-1420.

  162. M. Gokhale, J. Frigo, K. McCabe, J. Theiler, C. Wolinski, and D. Lavenier. "Experience with a Hybrid Processor: K-Means Clustering." Journal of Supercomputing 26 (2003) 131-148.

  163. R. Porter, N. Harvey, S. Perkins, J. Theiler, S. Brumby, J. Bloch, M. Gokhale, and J. Szymanski. "Optimizing Digital Hardware Perceptrons for Multi-Spectral Image Classification." J. Math. Imaging and Vision 19 (2003) 133-150.

  164. G. T. Kenyon, B. Moore, J. Jeffs, K. S. Denning, G. S. Stephens, B. J. Travis, J. S. George, J. Theiler, and D. W. Marshak. "A Model of High Frequency Oscillatory Potentials in Retinal Ganglion Cells." Visual Neuroscience 20 (2003) 465-480.

  165. D. Eads, D. Hill, S. Davis, S. Perkins, J. Ma, R. Porter, and J. Theiler. "Genetic Algorithms and Support Vector Machines for Time Series Classification." Proc. SPIE 4787 (2002) 74-85.

  166. J. Theiler, A. Galbraith, P. Pope, K. Ramsey, and J. Szymanski. "Automated Coregistration of MTI Spectral Bands." Proc. SPIE 4725 (2002) 314-327.

  167. N. R. Harvey, J. Theiler, L. Balick, P. Pope, J. J. Szymanski, S. J. Perkins, R. B. Porter, S. P. Brumby, J. J. Bloch, N. A. David, and M. Galassi. "Automated simultaneous multiple feature classification of MTI data." Proc. SPIE 4725 (2002) 346-356.

  168. J. J. Szymanski, S. P. Brumby, P. Pope, D. Eads, D. Esch-Mosher, M. Galassi, N. R. Harvey, H. D. W. McCulloch, S. J. Perkins, R. Porter, J. Theiler, A. C. Young, J. J. Bloch, and N. David. "Feature Extraction from Multiple Data Sources Using Genetic Programming." Proc. SPIE 4725 (2002) 338-345.

  169. J. Ma, S. Perkins, J. Theiler, and S. Ahalt. "Modified Kernel-based Nonlinear Feature Extraction." Proc. ICMLA (2002) 127-132.

  170. G. J. Stephens, J. S. George, J. Theiler, and G. T. Kenyon. "Spike-timing correlations between neighboring ganglion cells permit single-trial discrimination of large and small stimuli." Society for Neuroscience Abstracts 28 (2002).

  171. M. Galassi, J. Davies, J. Theiler, B. Gough, G. Jungman, M. Booth, and F. Rossi. "GNU Scientific Library Reference Manual." ISBN 0-9541617-0-X. Network Theory Ltd (2001).

  172. J. J. Bloch, D. Roussel-Dupré, J. Theiler, and E. Johnson. "Limits on the Emission from Fe VIII-XII in the Hot Local Interstellar Medium." In: Proceedings of Conference on ``Continuing the Challenge of EUV Astronomy: Current Analysis and Prospects for the Future,'' 22-24 July 2001, Jenner, California.

  173. N. R. Harvey, J. Theiler, S. P. Brumby, S. Perkins, J. J. Szymanski, J. J. Bloch, R. B. Porter, M. Galassi, and A. C. Young. "Comparison of GENIE and Conventional Supervised Classifiers for Multispectral Image Feature Extraction." IEEE Trans. Geoscience and Remote Sensing 40 (2002) 393-404.

  174. J. Theiler, J. Frigo, M. Gokhale, and J. J. Szymanski. "Co-design of Software and Hardware to Implement Remote Sensing Algorithms." Proc. SPIE 4480 (2001) 86-99.
    Note: Invited Paper.

  175. M. Leeser, P. Belanov, M. Estlick, M. Gokhale, J. J. Szymanski, and J. Theiler. "Applying reconfigurable hardware to the analysis of multispectral and hyperspectral imagery." Proc. SPIE 4480 (2001) 100-107.

  176. S. P. Brumby, J. Theiler, S. Perkins, N. R. Harvey, and J. J. Szymanski. "Genetic programming approach to extracting features from remotely sensed imagery." Proc. 4th International Conference on Information Fusion, Montreal, 2001.

  177. S. P. Brumby, J. Theiler, J. J. Bloch, N. R. Harvey, S. Perkins, J. J. Szymanski, and A. C. Young. "Evolving land cover classification algorithms for multi-spectral and multi-temporal imagery." Proc. SPIE 4480 (2001) 120-129.

  178. M. Leeser, P. Belanovic, M. Estlick, M. Gokhale, J. J. Szymanski, and J. Theiler. "Parameterized k-means clustering for rapid hardware development to accelerate analysis of satellite data." Fifth annual Conference on High Performance Embedded Computing (HPEC2001), MIT Lincoln Laboratory, November 2001.

  179. N. Harvey, J. Theiler, S. Perkins, J. Bloch, R. Porter, A. Young, S. Brumby, J. Szymanski, and M. Galassi. "Image Feature Extraction: GENIE vs. Conventional Supervised Classification Techniques." Proc. NSIP 2001 (IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing; June 3-6, 2001, Baltimore, MD, USA).

  180. C. C. Funk, J. Theiler, D. A. Roberts, and C. C. Borel. "Clustering to improve matched filter detection of weak gas plumes in hyperspectral thermal imagery." IEEE Trans. Geoscience and Remote Sensing 39 (2001) 1410-1420.

  181. M. Gokhale, J. Frigo, K. McCabe, J. Theiler, and D. Lavenier. "Early Experience with a Hybrid Processor: K-Means Clustering." In ERSA '01, First International Conference on Engineering of Reconfigurable Systems and Algorithms (ERSA '01), Las Vegas, NV, 25-28 June 2001.

  182. K. Yusim, M. Peeters, O. G. Pybus, T. Bhattacharya, E. Delaporte, C. Mulanga, M. Muldoon, J. Theiler, and B. Korber. "Using HIV-1 sequences to infer historical features of the AIDS epidemic and HIV evolution." Phil. Trans. R. Soc. Lond. B 356 (2001) 855-866.

  183. S. P. Brumby, J. J. Bloch, N. R. Harvey, J. Theiler, S. Perkins, A. C. Young, and J. J. Szymanski. "Evolving forest fire burn severity classification algorithms for multi-spectral imagery." Proc. SPIE 4381 (2001) 236-245.

  184. J. J. Szymanski, W. Atkins, L. Balick, C. C. Borel, W. B. Clodius, W. Christensen, A. B. Davis, J. C. Echohawk, A. Galbraith, K. Hirsch, J. B. Krone, C. Little, P. MacLachlan, A. Morrison, K. Pollock, P. Pope, C. Novak, K. Ramsey, E. Riddle, C. Rohde, D. Roussel-Dupré, B. W. Smith, K. Smith, K. Starkovich, J. Theiler, and P. Weber. "Multispectral Thermal Imager science, data product and ground data processing overview." Proc. IEEE International Geoscience and Remote Sensing Symposium (IGARSS) 3 (2001) 1458-1461.

  185. J. J. Szymanski, W. Atkins, L. Balick, C. C. Borel, W. B. Clodius, W. Christensen, A. B. Davis, J. C. Echohawk, A. Galbraith, K. Hirsch, J. B. Krone, C. Little, P. Maclachlan, A. Morrison, K. Pollock, P. Pope, C. Novak, K. Ramsey, E. Riddle, C. Rohde, D. Roussel-Dupré, B. W. Smith, K. Smith, K. Starkovich, J. Theiler, and P. G. Weber. "MTI Science, Data Products and Ground Data Processing Overview." Proc. SPIE 4381 (2001) 195-203.

  186. M. Estlick, M. Leeser, J. Theiler, and J. J. Szymanski. "Algorithmic Transforms in the Implementation of K-Means Clustering on Reconfigurable Hardware." In FPGA 2001, Ninth International Symposium on Field Programmable Gate Arrays (Association for Computing Machinery) 2001, pp. 103-110.

  187. G. T. Kenyon, J. Jeffs, J. Theiler, B. J. Travis, and D. W. Marshak. "Firing Correlations allow Improved Discrimination of Stimulus Parameters." Society for Neuroscience Abstracts 27 (2001).

  188. M. E. Leeser, J. Theiler, M. Estlick, N. V. Kitaryeva, and J. J. Szymanski. "Effect of Data Truncation in an Implementation of Pixel Clustering on a Custom Computing Machine." Proc. SPIE 4212 (2000) 80-89.

  189. M. Leeser, M. Estlick, N. Kitaryeva, J. Theiler, and J. J. Szymanski. "Applying Reconfigurable Hardware to Segmentation for Multispectral Imagery." In High Performance Embedded Computing (HPEC2000) Workshop, MIT Lincoln Laboratory, September 2000.

  190. D. Lavenier, J. Theiler, M. Gokhale, J. Frigo, and J. J. Szymanski. "FPGA Implementation of the Pixel Purity Algorithm for Hyper-Spectral Images." Proc. SPIE 4212 (2000) 30-41.

  191. J. Theiler, M. Leeser, M. Estlick, and J. J. Szymanski. "Design Issues for Hardware Implementation of an Algorithm for Segmenting Hyperspectral Imagery." Proc. SPIE 4132 (2000) 99-106.

  192. J. Theiler, D. D. Lavenier, N. R. Harvey, S. J. Perkins, and J. J. Szymanski. "Using blocks of skewers for faster computation of Pixel Purity Index." Proc. SPIE 4132 (2000) 61-71.

  193. N. R.Harvey, S. P.Brumby, S. J.Perkins, R. B. Porter, J. Theiler, A. C. Young, J. J.Szymanski, and J. J. Bloch. "Parallel evolution of image processing tools for multispectral imagery." Proc. SPIE 4132 (2000) 72-82.

  194. J. Szymanski, P. Blain, J. Bloch, C. Brislawn, S. Brumby, M. Caffery, M. Dunham, J. Frigo, M. Gokhale, N. Harvey, G. Kenyon, W. Kim, J. Layne, D. Lavenier, K. McCabe, M. Mitchell, K. Moore, S. Perkins, R. Porter, S. Robinson, A. Salazar, and J. Theiler. "Advanced Processing for High-bandwidth Sensor Systems." Proc. SPIE 4132 (2000) 83-90.

  195. S. Perkins, J. Theiler, S. P. Brumby, N. R. Harvey, R. Porter, J. J. Szymanski, and J. J. Bloch. "GENIE - A Hybrid Genetic Algorithm for Feature Classification in Multi-Spectral Images." Proc. SPIE 4120 (2000) 52-62.

  196. B. Korber, M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B. H. Hahn, S. Wolinsky, and T. Bhattacharya. "Timing the Ancestor of the HIV-1 Pandemic Strains." Science 288 (2000) 1789-1796.

  197. S. P. Brumby, N. R. Harvey, S. Perkins, R. B. Porter, J. J. Szymanski, J. Theiler, and J. J. Bloch. "A genetic algorithm for combining new and existing image processing tools for multispectral imagery." Proc. SPIE 4049 (2000) 480-490.

  198. M. Leeser, J. Theiler, M. Estlick, and J. J. Szymanski. "Design tradeoffs in a hardware implementation of the k-means clustering algorithm." Proc. SAM: First IEEE Sensor Array and Multichannel Signal Processing Workshop (2000) 520-524.

  199. N. R. Harvey, S. Perkins, S. P. Brumby, J. Theiler, R. B. Porter, A. C. Young, A. K. Varghese, J. J. Szymanski, and J. Bloch. "Finding Golf Courses: The Ultra High Tech Approach." Lecture Notes in Computer Science 1803 (2000) 54-64.

  200. J. Theiler and J. Bloch. "Multiple concentric annuli for characterizing spatially nonuniform backgrounds." The Astrophysical Journal 519 (1999) 372-388.

  201. C. Ho, K. L. Albright, A. W. Bird, J. Bradley, D. E. Casperson, M. Hindman, W. C. Priedhorsky, W. R. Scarlett, R. C. Smith, J. Theiler, and S. K. Wilson. "Demonstration of Literal Three-Dimensional Imaging." Applied Optics 38 (1999) 1833-1840.

  202. S. P. Brumby, J. Theiler, S. J. Perkins, N. R. Harvey, J. J. Szymanski, J. J. Bloch, and M. Mitchell. "Investigation of image feature extraction by a genetic algorithm." Proc. SPIE 3812 (1999) 24-31.

  203. M. P. Caffrey, A. Begtrup, J. Layne, T. Nelson, S. Robinson, A. Salazar, J. J. Szymanski, and J. Theiler. "High performance signal and image processing for remote sensing using reconfigurable computers." Proc. SPIE 3807 (1999) 142-149.

  204. D. C. Roussel-Dupré, J. J. Bloch, E. M. Johnson, and J. Theiler. "ALEXIS - the six year telescope flight experience." Proc. SPIE 3765 (1999) 312-328.

  205. J. Theiler, N. R. Harvey, S. P. Brumby, J. J. Szymanski, S. Alferink, S. J. Perkins, R. B. Porter, and J. J. Bloch. "Evolving retrieval algorithms with a genetic programming scheme." Proc. SPIE 3753 (1999) 416-425.

  206. C. C. Borel, W. B. Clodius, A. B. Davis, B. W. Smith, J. J. Szymanski, J. Theiler, P. V. Villeneuve, and P. G. Weber. "MTI Core Science Retrieval Algorithms." Proc. SPIE 3753 (1999) 403-415.

  207. J. J. Szymanski, C. C. Borel, W. B. Clodius, A. B. Davis, J. B. Krone, K. Ramsey, B. W. Smith, K. Smith, J. Theiler, P. V. Villeneuve, and P. G. Weber. "MTI ground data processing and science retrieval architecture." Proc. SPIE 3753 (1999) 394-402.

  208. P. V. Villeneuve, H. A. Fry, J. Theiler, W. B. Clodius, B. W. Smith, and A. D. Stocker. "Improved matched filter detection techniques." Proc. SPIE 3753 (1999) 278-285.

  209. C. C. Borel, W. B. Clodius, J. J. Szymanski, and J. Theiler. "Comparing robust and physics-based sea surface temperature retrievals for high resolution, multi-spectral thermal sensors using one or multiple looks." Proc. SPIE 3717 (1999) 58-71.

  210. J. J. Szymanski, C. C. Borel, Q. O. Harberger, P. Smolarkiewicz, and J. Theiler. "Subpixel temperature retrieval with multispectral sensors." Proc. SPIE 3717 (1999) 38-46.

  211. P. V. Villeneuve, H. A. Fry, J. Theiler, and B. W. Smith. "Improved matched filter-type detection techniques." In Sixth Annual CALIOPE Interim Technical Review, Sandia National Laboratory, Livermore, CA (March, 1999).

  212. P. G. Weber, J. Theiler, B. W. Smith, S. P. Love, P. C. LaDelfe, B. J. Cooke, W. B. Clodius, C. C. Borel, and S. C. Bender. "Measurement Strategies for Remote Sensing Applications." In Proc. IEEE Aerospace Conference 4 (1999) 105-112.

  213. C. L. Ehlers, J. Havstad, D. Prichard, and J. Theiler. "Low doses of ethanol reduce evidence for nonlinear structure in brain activity." J. Neuroscience 18 (1998) 7474-7486.

  214. B. Korber, J. Theiler, and S. Wolinsky. "Limitations of a Molecular Clock Applied to Considerations of the Origin of HIV-1." Science 280 (1998) 1868-1871.

  215. K. L. Albright, R. C. Smith, C. Ho, S. K. Wilson, J. M. Bradley, A. Bird, D. E. Casperson, M. A. Hindman, R. M. Whitaker, J. Theiler, W. R. Scarlett, and W. C. Priedhorsky. "RULLI / a photon counting imager." In Detection and Analysis of Sub-Surface Objects and Phenomena, Monterey, CA, October 8, 1998.

  216. M. L. Psiaki, J. Theiler, J. Bloch, S. Ryan, R. W. Dill, and R. E. Warner. "ALEXIS spacecraft attitude reconstruction with thermal/flexible motions due to launch damage." Journal of Guidance, Control, and Dynamics 20 (1997), 1033-1041.
    Note: Received the 1997 AIAA Best Paper Award.

  217. D. Roussel-Dupré, J. Bloch, C. Little, R. Dingler, B. Dunne, S. Fletcher, M. Kennison, K. Ramsey, R. King, J. Theiler, J. Sutton, and J. Wren. "ALEXIS, the little satellite that could - 4 years later." In Proc. 11th AIAA/USU Conference on Small Satellites (1997), SSC97-IV-3.

  218. J. Theiler and J. Bloch. "Nested Test for Point Sources." In Statistical Challenges in Modern Astronomy II, G. J. Babu and E. D. Feigelson, editors (Springer Verlag, New York, 1997), pp. 407-408.

  219. J. Theiler and J. Bloch. "Heuristic estimates of weighted binomial statistics for use in detecting rare point source transients." In Astronomical Data Analysis Software and Systems VI, G. Hunt and H. E. Payne, editors, vol. 125 of Astronomical Society of the Pacific Conference Series (1997), pp. 151-154.

  220. J. Theiler and B. G. Henderson. "A Geometrical Constraint on Shadowing in Rough Surfaces." Proc. SPIE 3122 (1997) 271-279.

  221. J. Theiler and G. Gisler. "A contiguity-enhanced k-means clustering algorithm for unsupervised multispectral image segmentation." Proc. SPIE 3159 (1997) 108-118.

  222. J. Theiler, B. G. Henderson, and B. W. Smith. "Algorithms Using Inter-band Cross-correlation for Pixel Registration and Jitter Reconstruction in Multi-channel Push-broom Imagers." Proc. SPIE 3163 (1997) 22-32.

  223. J. Theiler and W. C. Priedhorsky. "Intensity masking to get high resolution images from low quality apertures." Proc. SPIE 3170 (1997) 150-160.

  224. J. Theiler and D. Prichard. "Using surrogate surrogate data to calibrate the actual rate of false positives in tests for nonlinearity in time series." Fields Institute Communications 11 (1997) 99-113.

  225. D. Roussel-Dupré, J. Bloch, J. Theiler, T. Pfafman, and B. Beauchesne. "Detecting EUV Transients in Near Real Time with ALEXIS." In Astronomical Data Analysis Software and Systems V, G. H. Jacoby and J. Barnes, editors, vol 101 of Astronomical Society of the Pacific Conference Series (1996), pp. 112-115.

  226. S. Roberts, G. R. Gisler, and J. Theiler. "Spatio-spectral image analysis using classical and neural algorithms." In Smart Engineering Systems: Neural Networks, Fuzzy Logic, and Evolutionary Programming, Proceedings of the Artificial Neural Networks in Engineering (ANNIE '96) conference (ASME Press, New York, 1996), pp. 425-430.

  227. B. Henderson, C. C. Borel, J. Theiler, and B. W. Smith. "Image quality degradation and retrieval errors introduced by registration and interpolation of multispectral digital images." Proc. SPIE 2759 (1996) 149-160.

  228. D. Roussel-Dupré, T. Pfafman, J. Bloch, and J. Theiler. "EUV sources and transients detected by the ALEXIS satellite." IAU Symposium 179: Multiwavelength Astrophysics. BAAS 188, 76.04.

  229. B. W. Smith, C. C. Borel, W. B. Clodius, J. Theiler, B. E. Laubscher, and P. G. Weber. "End-to-end performance modeling of passive remote sensing systems." Proc. SPIE 2743 (1996) 285-289.

  230. J. Bloch and J. Theiler. "Proposed FITS Keywords and Column Headers for ALEXIS Mission Data Files." In Astronomical Data Analysis Software and Systems IV, R. A. Shaw, H. E. Payne, and J. J. E. Hayes, editors, vol 77 of Astronomical Society of the Pacific Conference Series, pp. 203-206 (1995).

  231. J. Theiler and P. E. Rapp. "Re-examination of the evidence for low-dimensional, nonlinear structure in the human electroencephalogram." Journal of Electroencephalography and Clinical Neurophysiology 98 (1996) 213-222.

  232. J. Theiler and D. Prichard. "Constrained-Realization Monte-Carlo method for hypothesis testing." Physica D 94 (1996) 221-235.

  233. D. Prichard and J. Theiler. "Generalized redundancies for time series analysis." Physica D 84 (1995) 476-493.

  234. J. Theiler and L. A. Smith. "Anomalous convergence of Lyapunov exponent estimates." Physical Review E 51 (1995) 3738-3741.

  235. J. Theiler. "On the evidence for low-dimensional chaos in an epileptic electroencephalogram." Physics Letters A 196 (1995) 335-341.

  236. J. Theiler, S. Nichols, and K. Wiesenfeld. "Vulnerability to noise of a phase-locked oscillator array." Physica D 80 (1995) 206-219.

  237. S. Ellner, A. R. Gallant, and J. Theiler. "Detecting nonlinearity and chaos in epidemic data." In Epidemic Models: Their Structure and Relation to Data, D. Mollison, editor (Cambridge University Press, 1995), pp. 229-247.

  238. J. Theiler. "Two tools to test time series data for evidence of chaos and/or nonlinearity." Integrative Physiological and Behavioral Science 29 (1994) 211-216.

  239. D. Prichard and J. Theiler. "Generating surrogate data for time series with several simultaneously measured variables." Physical Review Letters 73 (1994) 951-954.

  240. J. Levy, M. Sherwin, and J. Theiler. "Low-dimensional chaos and high-dimensional behavior in the switching charge-density-wave conductor NbSe3." Physical Review B 48 (1993) 7857-7865.

  241. J. Theiler and S. Eubank. "Don't bleach chaotic data." Chaos 3 (1993) 771-782.

  242. J. Theiler and T. Lookman. "Statistical error in a chord estimator of correlation dimension: the `rule of five'." International Journal of Bifurcations and Chaos (1993) 765-771.

  243. J. Levy, M. Sherwin, and J. Theiler. "Time-domain study of low-dimensional chaos in the switching charge-density-wave conductor NbSe3." Physical Review Letters 70 (1993) 2597-2600.

  244. J. Theiler. "Scaling behavior of a directed sandpile automata with random defects." Physical Review E 47 (1993) 733-734.

  245. J. Theiler, P. S. Linsay, and D. M. Rubin. "Detecting nonlinearity in data with long coherence times." In Time Series Prediction: Forecasting the Future and Understanding the Past, A. S. Weigend and N. A. Gershenfeld, editors Vol. XVII of SFI Studies in the Sciences of Complexity, (Addison-Wesley, 1993), pp. 429-455.

  246. J. Theiler. "Globally coupled chaos and the law of large numbers." CNLS Newsletter (December, 1992).

  247. J. Theiler, S. Eubank, A. Longtin, B. Galdrikian, and J. D. Farmer. "Testing for nonlinearity in time series: the method of surrogate data." Physica D 58 (1992) 77-94.
    Note: Reprinted in: Coping with Chaos: Analysis of Chaotic Data and The Exploitation of Chaotic Systems, E. Ott, T. Sauer, and J. A. Yorke, editors (John Wiley & Sons, New York, 1994), pp. 124-141.

  248. N. F. Hunter and J. Theiler. "Characterization of nonlinear input-output systems using time series analysis." In Proc. 1st Experimental Chaos Conference, S. Vohra, M. Spano, M. Shlesinger, L. Pecora, and W. Ditto, editors. (World Scientific, Singapore, 1992), pp. 54-60.

  249. J. Theiler, B. Galdrikian, A. Longtin, S. Eubank, and J. D. Farmer. "Detecting nonlinearity in time series." In Proc. 1st Experimental Chaos Conference, S. Vohra, M. Spano, M. Shlesinger, L. Pecora, and W. Ditto, editors. (World Scientific, Singapore, 1992), pp. 47-53.

  250. J. Theiler, B. Galdrikian, A. Longtin, S. Eubank, and J. D. Farmer. "Using surrogate data to detect nonlinearity in time series." In Nonlinear Modeling and Forecasting, M. Casdagli and S. Eubank, editors. Vol. XII of SFI Studies in the Sciences of Complexity. (Addison-Wesley, 1992), pp. 163-188.

  251. M. Casdagli, D. Des Jardins, S. Eubank, J. D. Farmer, J. Gibson, N. Hunter, and J. Theiler. "Nonlinear modeling of chaotic time series: theory and applications." In Applied Chaos, J. Kim and J. Stringer, editors. (Addison-Wesley, 1992), pp. 335-382.

  252. J. Theiler. "Application of a mean field approximation to two systems that exhibit self-organized criticality." In Modeling Complex Phenomena, L. Lam and V. Naroditsky, editors. (Springer-Verlag, New York, 1992), pp. 221-228.

  253. J. Theiler. "Some comments on the correlation dimension of 1/fa noise." Physics Letters A 155 (1991) 480-493.

  254. J. Theiler, G. Mayer-Kress, and J. B. Kadtke. "Chaotic attractors of a locally conservative hyperbolic map with overlap." Physica D 48 (1991) 425-444.

  255. K. Wiesenfeld, J. Theiler, and B. McNamara. "Self organized criticality in a deterministic automaton." Physical Review Letters 65 (1990) 949-952.

  256. J. Theiler. "Estimating fractal dimension." Journal of the Optical Society of America: A 7 (1990) 1055-1073.

  257. J. Theiler. "Estimating the fractal dimension of chaotic time series." The Lincoln Laboratory Journal 3 (1990) 63-86.

  258. J. Theiler. "Statistical precision of dimension estimators." Physical Review A 41 (1990) 3038-3051.

  259. J. Theiler. "Statistical error in dimension estimators." In Measures of Complexity and Chaos, N. Abraham, A. Albano, and A. Passamante, editors, (Plenum, New York, 1990), pp. 199-202.

  260. J. Theiler. "Lacunarity in a best estimator of fractal dimension." Physics Letters A 133 (1988) 195-200.

  261. J. Theiler. "Quantifying Chaos: Practical Estimation of the Correlation Dimension." Ph.D. Thesis, California Institute of Technology (1987).

  262. J. Theiler. "Efficient algorithm for estimating the correlation dimension from a set of discrete points." Physical Review A 36 (1987) 4456-4462.

  263. J. Theiler. "Spurious dimension from correlation algorithms applied to limited time-series data." Physical Review A 34 (1986) 2427-2432.
    Note: Reprinted in Chaos and Nonlinear Dynamics, R. C. Hilborn and N. B. Tufillaro, editors (AAPT, 1999).

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