Selected Publications (full list)

D. W. Dreisigmeyer, J. Stajic, I. Nemenman, W. S. Hlavacek, M. E. Wall. Determinants of bistability in induction of the Escherichia coli lac operon. IET Systems Biology. In press. Preprint (pdf).

R. G. Martin, E. S. Bartlett, J. L. Rosner, M. E. Wall. 2008. Activation of the Escherichia coli marA/soxS/rob regulon in response to transcriptional activator concentration. J Mol Biol 380:278-284. (PubMed).

D. Ming, M. Anghel, M. E. Wall. 2007. Hidden structure in protein energy landscapes. Phys. Rev. E. 77:021902. (PubMed). Preprint (pdf).

J. S. Edwards, J. R. Faeder, W. S. Hlavacek, Y. Jiang, I. Nemenman, M. E. Wall. 2007. q-bio 2007: a watershed moment in modern biology. Mol Syst Biol 3:148 (PubMed; URL)

D. Ming, M. E. Wall. 2006. Interactions in native binding sites cause a large change in protein dynamics. J Mol Biol 358:213-223. Reprint (pdf). Preprint (pdf).

D. Ming, M. E. Wall. 2005. Allostery in a Coarse-Grained Model of Protein Dynamics. Phys Rev Lett 95:198301. Reprint (URL). Preprint (pdf). arXiv (q-bio.BM/0506031).

M.E. Wall, W.S. Hlavacek, M.A. Savageau. 2004. Design of gene circuits: lessons from bacteria. Nat Rev Genet 5:34-42. Reprint (pdf); Online table (pdf); EcoTFs web site (URL).

M.E. Wall, S.H. Francis, J.D. Corbin, K. Grimes, R. Richie-Jannetta, J. Kotera, B.A. Macdonald, R.R. Gibson, J. Trewhella. 2003. Mechanisms associated with cGMP binding and activation of cGMP-dependent protein kinase. Proc Natl Acad Sci USA100:2380-2385. (PubMed)

M.E. Wall, S.C. Gallagher, J. Trewhella. 2000. Large-scale shape changes in proteins and macromolecular complexes. Ann Rev Phys Chem 51:355-380. (PubMed)